Batch Independent GPQR (Center-Gap)

import os

import torch
from torch.distributions import Normal
from gpytorch.variational import CholeskyVariationalDistribution
from gpytorch.variational import VariationalStrategy
from gpytorch.means import ConstantMean
from gpytorch.kernels import RBFKernel, ScaleKernel
from gpytorch.mlls import VariationalELBO
import matplotlib.pyplot as plt

from gpytorch_qr.means import CenterGapMean
from gpytorch_qr.models import CenterGapQuantileGP
from gpytorch_qr.likelihoods import BatchCenterGapQuantileGPLikelihood

try:
    import sys

    sys.path.insert(0, os.path.abspath(".."))

    import config_notebook
except ImportError:
    print("Output will not be deterministic SVG.")

torch.manual_seed(42)
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")

n_epochs = int(os.getenv("GPYTORCHQR_N_EPOCHS", 5000))

Data preparation

def mean(x):
    return torch.cos(x * 2 * 3.14)


def std(x):
    return x + 0.1


x_range = torch.linspace(0, 1, 100).reshape(-1, 1).to(device)
x = x_range.repeat(5, 1)
y = (mean(x) + torch.randn(x.shape, device=device).mul(std(x))).squeeze()
q = torch.tensor([0.1, 0.25, 0.5, 0.75, 0.9]).to(device)
true_quantiles = mean(x_range) + std(x_range) * Normal(0, 1).icdf(q)
x_pred = torch.linspace(0, 1.5, 100).reshape(-1, 1).to(device)

plt.scatter(x.cpu(), y.cpu(), c="k", marker=".")
plt.plot(x_range.cpu(), true_quantiles.cpu(), "--", c="gray")
plt.show()

Define model and likelihood

class MyGP(CenterGapQuantileGP):
    def __init__(self, inducing_points, num_quantiles, num_lower_quantiles):
        N, D = inducing_points.size()
        variational_distribution = CholeskyVariationalDistribution(
            N,
            batch_shape=torch.Size([num_quantiles]),
        )
        variational_strategy = VariationalStrategy(
            self,
            inducing_points,
            variational_distribution,
            learn_inducing_locations=True,
        )

        mean = CenterGapMean(
            ConstantMean(batch_shape=torch.Size([1])),
            ConstantMean(batch_shape=torch.Size([num_quantiles - 1])),
            latent_dim=0,
        )
        covar = ScaleKernel(
            RBFKernel(ard_num_dims=D, batch_shape=torch.Size([num_quantiles])),
            batch_shape=torch.Size([num_quantiles]),
        )
        super().__init__(variational_strategy, mean, covar, 0, num_lower_quantiles)


inducing_points = torch.linspace(0, 1, 10).reshape(-1, 1).to(device)
central_q_index = (q - 0.5).abs().argmin().item()
gp = MyGP(inducing_points, len(q), central_q_index).to(device)
likelihood = BatchCenterGapQuantileGPLikelihood(q, central_q_index).to(device)

Train

gp.train()
likelihood.train()
mll = VariationalELBO(likelihood, gp, num_data=y.numel())
optimizer = torch.optim.Adam(
    list(gp.parameters()) + list(likelihood.parameters()),
    lr=0.001,
)

for _ in range(n_epochs):
    output = gp(x)
    loss = -mll(output, y).sum()
    loss.backward()
    optimizer.step()
    optimizer.zero_grad()

Plot result

gp.eval()
with torch.no_grad():
    mean_q = gp.mean_quantiles_mc(x_pred)
    lower_q, upper_q = gp.quantile_quantiles_mc(
        x_pred, torch.tensor([0.025, 0.975]).to(device)
    )

colors = plt.cm.tab10.colors

plt.scatter(x.cpu(), y.cpu(), c="gray", marker=".", alpha=0.1)
plt.plot(x_range.cpu(), true_quantiles.cpu(), "--", c="k")

for i in range(len(q)):
    plt.plot(x_pred.cpu(), mean_q[i].cpu(), color=colors[i])
    plt.fill_between(
        x_pred.cpu().squeeze(),
        lower_q[i].cpu(),
        upper_q[i].cpu(),
        color=colors[i],
        alpha=0.3,
    )
plt.show()